genomicsnpanalyzer.genomebrowser.entry
Class GenomeBrowserCoord

java.lang.Object
  extended by genomicsnpanalyzer.genomebrowser.entry.GenomeBrowserCoord

public class GenomeBrowserCoord
extends java.lang.Object


Field Summary
 java.awt.Rectangle cscoreHotspotCoord
           
 boolean cscoreHotspotOn
           
 java.awt.Rectangle[] DbSNPCoords
           
 int DbSNPHighlighIndex
           
 java.awt.Rectangle DbSnpHotspotCoord
           
 boolean DbSnpHotspotOn
           
 java.awt.Rectangle DbSNPRegionCoord
           
 java.awt.Rectangle[] DGVCNVCoords
           
 int DGVCNVHighlighIndex
           
 java.awt.Rectangle DGVCNVHotspotCoord
           
 boolean DGVCNVHotspotOn
           
 java.awt.Rectangle DGVCNVRegionCoord
           
 java.awt.Rectangle[] HapmapSNPCoords
           
 int HapmapSNPHighlighIndex
           
 java.awt.Rectangle HapmapSnpHotspotCoord
           
 boolean HapmapSnpHotspotOn
           
 java.awt.Rectangle HapmapSNPRegionCoord
           
 java.awt.Rectangle[] Illumina1mSNPCoords
           
 int Illumina1mSNPHighlighIndex
           
 java.awt.Rectangle Illumina1mSNPRegionCoord
           
 java.awt.Rectangle IlluminaSnpHotspotCoord
           
 boolean IlluminaSnpHotspotOn
           
 java.awt.Rectangle numhitHotspotCoord
           
 boolean numhitHotspotOn
           
 java.awt.Rectangle[] oneKSNPCoords
           
 int oneKSNPHighlighIndex
           
 java.awt.Rectangle oneKSNPHotspotCoord
           
 boolean oneKSNPHotspotOn
           
 java.awt.Rectangle oneKSNPRegionCoord
           
 java.awt.Rectangle readDepthHotspotCoord
           
 boolean readDepthHotspotOn
           
 java.awt.Rectangle[] repeatCoords
           
 int repeatHighlighIndex
           
 java.awt.Rectangle repeatHotspotCoord
           
 boolean repeatHotspotOn
           
 java.awt.Rectangle repeatRegionCoord
           
 java.awt.Rectangle[] RsSNPCoords
           
 int RsSNPHighlighIndex
           
 java.awt.Rectangle RsSNPRegionCoord
           
 java.awt.Rectangle[] SmallIndelCoords
           
 int SmallIndelHighlighIndex
           
 java.awt.Rectangle SmallIndelHotspotCoord
           
 boolean SmallIndelHotspotOn
           
 java.awt.Rectangle SmallIndelRegionCoord
           
 java.awt.Rectangle[] SNPCoords
           
 int SNPHighlighIndex
           
 java.awt.Rectangle SnpHotspotCoord
           
 boolean SnpHotspotOn
           
 java.awt.Rectangle SNPRegionCoord
           
 java.awt.Rectangle SnpRsHotspotCoord
           
 boolean SnpRsHotspotOn
           
 java.awt.Rectangle[] SVCoords
           
 int SVHighlighIndex
           
 java.awt.Rectangle SVHotspotCoord
           
 boolean SVHotspotOn
           
 java.awt.Rectangle SVRegionCoord
           
 java.awt.Rectangle[] TaggedCNVCoords
           
 int TaggedCNVHighlighIndex
           
 java.awt.Rectangle TaggedCNVHotspotCoord
           
 boolean TaggedCNVHotspotOn
           
 java.awt.Rectangle TaggedCNVRegionCoord
           
 int TranscriptHighlighIndex
           
 java.awt.Rectangle TranscriptRegionCoord
           
 java.awt.Rectangle[] TransctiptCoords
           
 java.awt.Rectangle TransHotspotCoord
           
 boolean TransHotspotOn
           
 java.awt.Rectangle[] venterindelCoords
           
 int venterindelHighlighIndex
           
 java.awt.Rectangle venterindelHotspotCoord
           
 boolean venterindelHotspotOn
           
 java.awt.Rectangle venterindelRegionCoord
           
 java.awt.Rectangle[] ventersnpCoords
           
 int ventersnpHighlighIndex
           
 java.awt.Rectangle ventersnpHotspotCoord
           
 boolean ventersnpHotspotOn
           
 java.awt.Rectangle ventersnpRegionCoord
           
 
Constructor Summary
GenomeBrowserCoord()
           
 
Method Summary
 void CoordinateMinusY(int y)
           
 void ResetAllSwitches()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

TransHotspotCoord

public java.awt.Rectangle TransHotspotCoord

TransHotspotOn

public boolean TransHotspotOn

SnpHotspotCoord

public java.awt.Rectangle SnpHotspotCoord

cscoreHotspotOn

public boolean cscoreHotspotOn

cscoreHotspotCoord

public java.awt.Rectangle cscoreHotspotCoord

readDepthHotspotOn

public boolean readDepthHotspotOn

readDepthHotspotCoord

public java.awt.Rectangle readDepthHotspotCoord

numhitHotspotOn

public boolean numhitHotspotOn

numhitHotspotCoord

public java.awt.Rectangle numhitHotspotCoord

SnpHotspotOn

public boolean SnpHotspotOn

SnpRsHotspotCoord

public java.awt.Rectangle SnpRsHotspotCoord

SnpRsHotspotOn

public boolean SnpRsHotspotOn

DbSnpHotspotCoord

public java.awt.Rectangle DbSnpHotspotCoord

DbSnpHotspotOn

public boolean DbSnpHotspotOn

HapmapSnpHotspotCoord

public java.awt.Rectangle HapmapSnpHotspotCoord

HapmapSnpHotspotOn

public boolean HapmapSnpHotspotOn

IlluminaSnpHotspotCoord

public java.awt.Rectangle IlluminaSnpHotspotCoord

IlluminaSnpHotspotOn

public boolean IlluminaSnpHotspotOn

oneKSNPHotspotCoord

public java.awt.Rectangle oneKSNPHotspotCoord

oneKSNPHotspotOn

public boolean oneKSNPHotspotOn

ventersnpHotspotCoord

public java.awt.Rectangle ventersnpHotspotCoord

ventersnpHotspotOn

public boolean ventersnpHotspotOn

venterindelHotspotCoord

public java.awt.Rectangle venterindelHotspotCoord

venterindelHotspotOn

public boolean venterindelHotspotOn

repeatHotspotCoord

public java.awt.Rectangle repeatHotspotCoord

repeatHotspotOn

public boolean repeatHotspotOn

SmallIndelHotspotCoord

public java.awt.Rectangle SmallIndelHotspotCoord

SmallIndelHotspotOn

public boolean SmallIndelHotspotOn

SVHotspotCoord

public java.awt.Rectangle SVHotspotCoord

SVHotspotOn

public boolean SVHotspotOn

DGVCNVHotspotCoord

public java.awt.Rectangle DGVCNVHotspotCoord

DGVCNVHotspotOn

public boolean DGVCNVHotspotOn

TaggedCNVHotspotCoord

public java.awt.Rectangle TaggedCNVHotspotCoord

TaggedCNVHotspotOn

public boolean TaggedCNVHotspotOn

TranscriptRegionCoord

public java.awt.Rectangle TranscriptRegionCoord

TransctiptCoords

public java.awt.Rectangle[] TransctiptCoords

TranscriptHighlighIndex

public int TranscriptHighlighIndex

SNPRegionCoord

public java.awt.Rectangle SNPRegionCoord

SNPCoords

public java.awt.Rectangle[] SNPCoords

SNPHighlighIndex

public int SNPHighlighIndex

RsSNPRegionCoord

public java.awt.Rectangle RsSNPRegionCoord

RsSNPCoords

public java.awt.Rectangle[] RsSNPCoords

RsSNPHighlighIndex

public int RsSNPHighlighIndex

DbSNPRegionCoord

public java.awt.Rectangle DbSNPRegionCoord

DbSNPCoords

public java.awt.Rectangle[] DbSNPCoords

DbSNPHighlighIndex

public int DbSNPHighlighIndex

HapmapSNPRegionCoord

public java.awt.Rectangle HapmapSNPRegionCoord

HapmapSNPCoords

public java.awt.Rectangle[] HapmapSNPCoords

HapmapSNPHighlighIndex

public int HapmapSNPHighlighIndex

Illumina1mSNPRegionCoord

public java.awt.Rectangle Illumina1mSNPRegionCoord

Illumina1mSNPCoords

public java.awt.Rectangle[] Illumina1mSNPCoords

Illumina1mSNPHighlighIndex

public int Illumina1mSNPHighlighIndex

ventersnpRegionCoord

public java.awt.Rectangle ventersnpRegionCoord

ventersnpCoords

public java.awt.Rectangle[] ventersnpCoords

ventersnpHighlighIndex

public int ventersnpHighlighIndex

venterindelRegionCoord

public java.awt.Rectangle venterindelRegionCoord

venterindelCoords

public java.awt.Rectangle[] venterindelCoords

venterindelHighlighIndex

public int venterindelHighlighIndex

repeatRegionCoord

public java.awt.Rectangle repeatRegionCoord

repeatCoords

public java.awt.Rectangle[] repeatCoords

repeatHighlighIndex

public int repeatHighlighIndex

oneKSNPRegionCoord

public java.awt.Rectangle oneKSNPRegionCoord

oneKSNPCoords

public java.awt.Rectangle[] oneKSNPCoords

oneKSNPHighlighIndex

public int oneKSNPHighlighIndex

SmallIndelRegionCoord

public java.awt.Rectangle SmallIndelRegionCoord

SmallIndelCoords

public java.awt.Rectangle[] SmallIndelCoords

SmallIndelHighlighIndex

public int SmallIndelHighlighIndex

SVRegionCoord

public java.awt.Rectangle SVRegionCoord

SVCoords

public java.awt.Rectangle[] SVCoords

SVHighlighIndex

public int SVHighlighIndex

DGVCNVRegionCoord

public java.awt.Rectangle DGVCNVRegionCoord

DGVCNVCoords

public java.awt.Rectangle[] DGVCNVCoords

DGVCNVHighlighIndex

public int DGVCNVHighlighIndex

TaggedCNVRegionCoord

public java.awt.Rectangle TaggedCNVRegionCoord

TaggedCNVCoords

public java.awt.Rectangle[] TaggedCNVCoords

TaggedCNVHighlighIndex

public int TaggedCNVHighlighIndex
Constructor Detail

GenomeBrowserCoord

public GenomeBrowserCoord()
Method Detail

CoordinateMinusY

public void CoordinateMinusY(int y)

ResetAllSwitches

public void ResetAllSwitches()