genomicsnpanalyzer.genomebrowser.entry
Class SortableTranscript

java.lang.Object
  extended by genomicsnpanalyzer.genomebrowser.entry.SortableTranscript
All Implemented Interfaces:
java.io.Serializable, java.lang.Comparable

public class SortableTranscript
extends java.lang.Object
implements java.lang.Comparable, java.io.Serializable

See Also:
Serialized Form

Field Summary
 java.lang.String biotype
           
static java.util.Comparator biotypeComparator
           
 boolean display
           
 double end
           
 java.lang.String ensemblGeneStableID
           
 java.lang.String ensemblTranscriptStableID
           
 java.util.ArrayList exon
           
 java.lang.String geneDescription
           
static java.util.Comparator geneIDComparator
           
 java.lang.String genename
           
 java.util.ArrayList GO
           
static java.util.Comparator goComparator
           
static java.util.Comparator nameComparator
           
 double start
           
 int strand
           
 java.lang.String transcriptID
           
static java.util.Comparator transIDComparator
           
 
Constructor Summary
SortableTranscript()
          Creates a new instance of ATranscript
 
Method Summary
 int compareTo(java.lang.Object another)
           
 void initExon()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

start

public double start

end

public double end

strand

public int strand

exon

public java.util.ArrayList exon

genename

public java.lang.String genename

geneDescription

public java.lang.String geneDescription

biotype

public java.lang.String biotype

transcriptID

public java.lang.String transcriptID

ensemblGeneStableID

public java.lang.String ensemblGeneStableID

ensemblTranscriptStableID

public java.lang.String ensemblTranscriptStableID

GO

public java.util.ArrayList GO

display

public boolean display

nameComparator

public static java.util.Comparator nameComparator

biotypeComparator

public static java.util.Comparator biotypeComparator

goComparator

public static java.util.Comparator goComparator

geneIDComparator

public static java.util.Comparator geneIDComparator

transIDComparator

public static java.util.Comparator transIDComparator
Constructor Detail

SortableTranscript

public SortableTranscript()
Creates a new instance of ATranscript

Method Detail

compareTo

public int compareTo(java.lang.Object another)
              throws java.lang.ClassCastException
Specified by:
compareTo in interface java.lang.Comparable
Throws:
java.lang.ClassCastException

initExon

public void initExon()