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![]() InstallationUsing this software0. For impatient users1. Data inputs ![]() 2. Create a project 3. Annotate a project ![]() ![]() 4. Filter for quality scores 5. Main user interface 6. SVA genome browser ![]() ![]() ![]() 7. SVA tables ![]() ![]() ![]() 8. Selecting genes or regions ![]() ![]() ![]() ![]() ![]() 9. Analysis ![]() ![]() ![]() 10. Exome or targeted capture sequencing A command line toolFAQRequests and discussions![]() |
![]() Selecting genes by biological pathways or gene ontology terms
SVA allows selecting genes by KEGG pathways or gene ontology terms. 1. Selecting by KEGG pathways To access this function, click on menu "Filter -> Gene filter - pathway ", or click on button "Gene filter - pathway ". You will see a dialog like this: You have three ways to select genes:
If you would like to remove all the selected genes, click on button "<<Deselect all". After you select the genes, click on button "FILTER". This process will first select all the genes associated with the selected biological pathways, then select all the variants related to the selected genes, by the functional categories defined here. 2. Selecting by gene ontology (GO) terms To access this function, click on menu "Filter -> Gene filter - gene ontology ", or click on button "Gene filter - gene ontology ". You will see a dialog like this: You have three ways to select genes:
If you would like to remove all the selected genes, click on button "<<Deselect all". After you select the genes, click on button "FILTER". This process will first select all the genes associated with the selected GO terms, then select all the variants related to the selected genes, by the functional categories defined here.
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